PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19932
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 189aa    MW: 21912.9 Da    PI: 9.1029
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19932genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-12115140126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++tG C+y + C+FaHg
  PEQU_19932 115 FKTELCNKWQETGGCPYREHCQFAHG 140
                 79***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.8E-17111147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-10112146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779114142IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-6114141IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8115140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-9148180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-13148179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526152180IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5152179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MWLLNDHFRR LSLAERPDEA SPTSVFGFQD NHLGRKWPSV DDKRITLPKS ISVRSTGYLK  60
LHQMVGSCSE FNRNPRHRPT TPVMQQKVRL GGAEKKDGGE AEDAVEFDVY SQGMFKTELC  120
NKWQETGGCP YREHCQFAHG ITELRPVIRH PRYKTELCRM ILTGDTCPYG HRCHFRHSLS  180
PQDRLFRPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-21115178467Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800937.13e-75PREDICTED: zinc finger CCCH domain-containing protein 9-like
SwissprotA2ZVY54e-58C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLM0SMY61e-61M0SMY6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P11210_0013e-61(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.27e-53C3H family protein